Laboratory of Molecular Cytogenetics. Publications for previous years

  1. Volkova EI, Andreyenkova NG, Andreyenkov OV, Sidorenko DS, Zhimulev IF, Demakov SA.  Structural and functional dissection of the 5’ region of the Notch gene in Drosophila melanogaster. (doi: 10.3390/genes10121037) Genes 10(12): 1037, 2019

  2. Titov SE, Ivanov MK, Demenkov PS, Katanyan GA, Kozorezova ES, Malek AV, Veryaskina YuA, Zhimulev IF. Combined quantitation of HMGA2 mRNA, microRNAs, and mitochondrial-DNA content enables the identification and typing of thyroid tumors in fine-needle aspiration smears. (doi: 10.1186/s12885-019-6154-7) BMC Cancer 19: 1010, 2019

  3. Maksimov DA, Koryakov DE. Binding of SU(VAR)3-9 partially depends on SETDB1 in the chromosomes of Drosophila melanogaster. (doi: 10.3390/cells8091030) Cells 8(9): 1030, 2019

  4. Kolesnikov NN, Veryaskina YuA, Titov SE, Rodionov VV, Gening TP, Abakumova TV, Kometova VV, Torosyan MKh, Zhimulev IF. Expression of micrornas in molecular genetic breast cancer subtypes. (doi: 10.1016/j.ctarc.2016.08.006) Cancer Treat Res Commun 20: 100026, 2019

  5. Zykova TYu, Levitsky VG, Zhimulev IF. Architecture of promoters of house-keeping genes in polytene chromosome interbands of Drosophila melanogaster. (doi: 10.1134/S1607672919020029) Dokl Biochem Biophys 485(1): 95-100, 2019

  6. Sidorenko DS, Sidorenko IA, Zykova TY, Goncharov FP, Larsson J, Zhimulev IF. Molecular and genetic organization of bands and interbands in the dot chromosome of Drosophila melanogaster. (doi: 10.1007/s00412-019-00703-x) Chromosoma 128(2): 97-117, 2019

  7. de Jong TV, Moshkin YuM, Guryev V. Gene expression variability: the other dimension in transcriptome analysis. (doi: 10.1152/physiolgenomics.00128.2018) Physiol Genomics 51(5): 145–158, 2019

  8. Khoroshko VA, Pokholkova GV, Zykova TYu, Osadchiy IS, Zhimulev IF. Gene dunce localization in the polytene chromosome of Drosophila melanogaster long span batch of adjacent chromosomal structures. (doi: 10.1134/S1607672919010137) Doklady Biochem Biophys 484(1): 55-58, 2019

  9. Maslennikova SO, Gerlinskaya LA, Kontsevaya GV, Anisimova MV, Nedospasov SA,  Feofanova NA, Moshkin MP, Moshkin YM. TNFα is responsible for the canonical offspring number-size trade-off. (doi: 10.1038/s41598-019-38844-9) Sci Reports 9(1): 4568, 2019

  10. Andreyenkova NG, Starikov IJ, Wink M, Karyakin IV, Andreyenkov OV, Zhimulev IF. The problems of genetic support of dividing the black kite (Milvus migrans) into subspecies. (doi: 10.18699/VJ19.486) Vavilov J Genetics Breeding 23(2): 226-231, 2019

  11. Sidorenko DS, Zykova TYu, Khoroshko VA, Pokholkova GV, Demakov SA, Larsson J, Belyaeva ES, Zhimulev IF. Polytene chromosomes reflect functional organization of the Drosophila genome. (doi: 10.18699/VJ19.474) Vavilov J Genetics Breeding 23(2): 148-153, 2019

  12. Kolesnikova TD, Antonenko OV, Makunin IV. Replication timing in Drosophila and its peculiarities in polytene chromosomes. (doi: 10.18699/VJ19.473) Vavilov J Genetics Breeding 23(2): 140-147, 2019

  13. Zykova TYu, Popova OO, Khoroshko VA, Levitsky VG, Lavrov SA, Zhimulev IF. Genetic organization of open chromatin domains situated in polytene chromosome interbands in Drosophila. (doi: 10.1134/S1607672918060078) Doklady Biochem Biophys 483(1): 297–301, 2018

  14. Andreyenkova NG, Andreyenkov OV, Karyakin IV, Zhimulev IF. New haplotypes of the mitochondrial gene CytB in the nesting population of the siberian black kite Milvus migrans lineatus Gray, 1831 in the territory of the Republic of Tyva. (doi: 10.1134/S1607672918050034) Doklady Biochem Biophys 482(1): 242–244, 2018

  15. Khoroshko VA, Zykova TY, Popova OO, Zhimulev IF. Border structure of intercalary heterochromatin bands of Drosophila melanogaster polytene chromosomes. (doi: 10.1134/S1607672918020163) Dokl Biochem Biophys 479(1): 114-117, 2018

  16. Kolesnikova TD. Banding pattern of polytene chromosomes as a representation of universal principles of chromatin organization into topological domains. (doi: 10.1134/S0006297918040053) Biochemistry (Mosc) 83(4): 338-349, 2018

  17. Kolesnikova TD, Goncharov FP, Zhimulev IF. Similarity in replication timing between polytene and diploid cells is associated with the organization of the Drosophila genome. (doi: 10.1371/journal.pone.0195207) PLoS ONE 13(4): e0195207, 2018

  18. Pokholkova GV, Demakov SA, Andreenkov OV, Andreenkova NG, Volkova EI, Belyaeva ES, Zhimulev IF. Tethering of CHROMATOR and dCTCF proteins results in decompaction of condensed bands in the Drosophila melanogaster polytene chromosomes but does not affect their transcription and replication timing. (doi: 10.1371/journal.pone.0192634) PLoS ONE 13(4): e0192634, 2018

  19. Zykova TYu, Levitsky VG, Belyaeva ES, Zhimulev IF. Polytene chromosomes – a portrait of functional organization of the Drosophila genome. (doi: 10.2174/1389202918666171016123830) Curr Genomics 19(3): 179-191, 2018

  20. Maksimov DA, Laktionov PP, Posukh OV, Belyakin SN, Koryakov DE. Genome-wide analysis of SU(VAR)3-9 distribution in chromosomes of Drosophila melanogaster. (doi: 10.1007/s00412-017-0647-4) Chromosoma 127(1): 85-102, 2018

  21. Posukh OV, Maksimov DA, Laktionov PP, Koryakov DE, Belyakin SN. Functional dissection of Drosophila melanogaster SUUR protein influence on H3K27me3 profile. (doi: 10.1186/s13072-017-0163-z) Epigenetics Chromatin 10: 56, 2017

  22. Rykova E, Sizikov A, Roggenbuck D, Antonenko O, Bryzgalov L, Morozkin E, Skvortsova K, Vlassov V, Laktionov P, Kozlov V. Circulating DNA in rheumatoid arthritis: pathological changes and association with clinically used serological markers. (doi: 10.1186/s13075-017-1295-z) Arthritis Res Ther 19: 85, 2017

  23. Andreyeva EN, Bernardo TJ, Kolesnikova TD, Lu X, Yarinich LA, Bartholdy BA, Guo X, Posukh OV, Healton S, Willcockson MA, Pindyurin AV, Zhimulev IF, Skoultchi AI, Fyodorov DV. Regulatory functions and chromatin loading dynamics of linker histone H1 during endoreplication in Drosophila. (doi: 10.1101/gad.295717.116) Genes Dev 31: 603-616, 2017

  24. Romashchenko AV, Kan T-W, Petrovski DV, Gerlinskaya LA, Moshkin MP, Moshkin YuM. Nanoparticles associate with intrinsically disordered RNA-binding proteins. (doi: 10.1021/acsnano.6b05992) ACS Nano 11(2): 1328-1339, 2017 

  25. Boldyreva LV, Goncharov FP, Demakova OV, Zykova TYu, Levitsky VG, Kolesnikov NN, Pindyurin AV, Semeshin VF, Zhimulev IF. Protein and genetic composition of four chromatin types in Drosophila melanogaster cell lines. (doi:  10.2174/1389202917666160512164913) Curr Genomics, 18(2): 214-226, 2017

  26. Stupak EV, Veryaskina YuA, Titov SE, Achmerova LG, Stupak VV, Ivanov MK, Zhimulev IF, Kolesnikov NN. MicroRNA profiling in the malignant progression of gliomas. AIP Conf Proc 1760, 020065, doi: 10.1063/1.4960284, 2016

  27. Horvath M, Mihajlovic Z, Slaninova V, Perez-Gomez R, Moshkin Y, Krejci A. The silent information regulator 1 (Sirt1) is a positive regulator of the Notch pathway in Drosophila. (doi: 10.1042/BCJ20160563) Biochem J 473: 4129-4143, 2016

  28. Kolesnikova  TD, Goncharov FP, Zhimulev IF. Fine mapping of late-replicating bands partitions the Drosophila genome into two contrasting types of domains whose properties are dependent on their size. Cytogenet Genome Res 148: 90, 2016

  29. Khoroshko VA, Levitsky VG, Zykova TY, Antonenko OV, Belyaeva ES, Zhimulev IF. Chromatin heterogeneity and distribution of regulatory elements in the late-replicating intercalary heterochromatin domains of Drosophila melanogaster chromosomes. (doi: 10.1371/journal.pone.0157147) PLoS ONE 11(6): e0157147, 2016

  30. Titov SE, Ivanov MK, Karpinskaya EV, Tsivlikova EV, Shevchenko SP, Veryaskina YA, Akhmerova LG, Poloz TL, Klimova OA, Gulyaeva LF, Zhimulev IF, Kolesnikov NN. miRNA profiling, detection of BRAF V600E mutation and RET-PTC1 translocation in patients from Novosibirsk oblast (Russia) with different types of thyroid tumors. (doi: 10.1186/s12885-016-2240-2) BMC Cancer 16: 201, 2016

  31. Chereji RV, Kan T-W, Grudniewska MK, Romashchenko AV, Berezikov E, Zhimulev IF, Guryev V, Morozov AV, Moshkin YuM. Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in Drosophila melanogaster. (doi: 10.1093/nar/gkv978) Nucleic Acids Res 44: 1036-1051, 2016

  32. Zykova T, Demidova D, Levitsky V, Khoroshko V, Belyaeva E, Kokoza E, Zhimulev I. Molecular and genetic structure of polytene chromosome banding pattern in Drosophila melanogaster. Athens: ATINER'S Conference Paper Series, No: BIO2015-1700: 4-15, 2015

  33. Zhimulev IF, Zykova TYu, Goncharov FP, Khoroshko VA, Demakova OV, Semeshin VF, Pokholkova GV, Boldyreva LV, Demidova DS, Levitsky VG, Demakov SA, Belyaeva ES. Genetic organization of interphase chromosome bands and interbands in Drosophila melanogaster. (doi: 10.1007/s10577-014-9447-3) Chromosome Res 23: 409-410, 2015

  34. Posukh OV, Maksimov DA, Skvortsova KN, Koryakov DE, Belyakin SN. The effects of SUUR protein suggest its role in repressive chromatin renewal during replication in Drosophila. (doi: 10.1080/19491034.2015.1074366) Nucleus 6: 249-253, 2015

  35. Hoskins RA,... Demakova OV, Andreyeva EN, Boldyreva LV,... Zhimulev IF,... Celniker SE. The Release 6 reference sequence of the Drosophila melanogaster genome. (doi: 10.1101/gr.185579.114) Genome Res 25: 445-458, 2015

  36. Okotrub KA, Surovtsev NV, Semeshin VF, Omelyanchuk LV. Raman spectroscopy for DNA quantification in cell nucleus. (doi: 10.1002/cyto.a.22585) Cytometry A 87: 68-73, 2015

  37. Koryakov DE, Zhimulev IF. DNA replication in nurse cell polytene chromosomes of Drosophila melanogaster otu mutants. (doi: 10.1007/s00412-014-0487-4) Chromosoma 124: 95-106, 2015

  38. Pokholkova GV, Koryakov DE, Pindyurin AV, Kozhevnikova EN, Belyakin SN, Andreyenkov OV, Belyaeva ES, Zhimulev IF. Tethering of SUUR and HP1 proteins results in delayed replication of euchromatic regions in Drosophila melanogaster polytene chromosomes. (doi: 10.1007/s00412-014-0491-8) Chromosoma 124: 209-220, 2015

Research Groups

Department of Structure and Function of Chromosomes
Department of Diversity and Evolution of Genomes
Department of Regulation of Genetic Processes